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  • PlantTFDB - Plant Transcription Factor Database @ CBI, PKU - Gao Lab
    Sets of TF binding motifs for 156 species (157 organisms) Back to Top A set of manually curated, non-redundancy and high-quality TF binding Motifs derived from experiments (Motif information, All motifs in one file, and Individual motifs) are projected to 156 species using BLAST reciprocal best hits in the same family (see Methods for details)
  • PlantTFDB - Plant Transcription Factor Database @ CBI, PKU - Gao Lab
    A TF prediction server has been upgraded in this version The family assignment rules and thresholds determined by established methods (see details in the supplemental materials) are used to identify transcrption factors in the input sequences When users input nucleic acid sequences, ESTScan 3 0 is employed to identify CDS regions of input nucleic acid sequences and translate them to protein
  • 植物转录因子及转录调控数据与分析平台 - Gao Lab
    植物转录因子及转录调控数据与分析平台 PlantTFDB：植物转录因子数据库 URL: http: planttfdb cbi pku edu cn 包含资源： 植物转录因子
  • PlantTFDB - Plant Transcription Factor Database @ CBI, PKU - Gao Lab
    MYB Family Introduction MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain The first MYB gene identified was the "oncogene" v-Myb derived from the avian myeloblastosis virus
  • 植物转录因子分类、预测和数据库构建 - Gao Lab
    We made high-quality annotations for these TFs and built a plant TF database PlantTFDB（http： planttfdb cbi pku edu cn） A TF prediction server was also developed for users to predict TFs from their own sequences
  • PlantTFDB - Plant Transcription Factor Database @ CBI, PKU - Gao Lab
    After a systematically reviewing recently-published literatures, we refined family assignment rules Families that do not meet the criteria ('Transcription factors are proteins that show sequence-specific DNA binding and are capable of activating or and repressing transcription') were excluded in the updated version, such as transcription cofactors (e g AUX IAA, GIF and chromatin related
  • PlantTFDB - Plant Transcription Factor Database @ CBI, PKU - Gao Lab
    ERF Family Introduction The AP2 ERF superfamily is defined by the AP2 ERF domain, which consists of about 60 to 70 amino acids and is involved in DNA binding
  • PlantTFDB - Plant Transcription Factor Database @ CBI, PKU - Gao Lab
    Firstly, we collected binding motifs derived from experiments from PlantCistromeDB, CIS-BP, JASPAR, UniPROBE, TRANSFAC (public 7 0), literature and motifs discovered from ChIP-seq peaks using MEME-ChIP ; For TFs with more than one motif, we manually selected the best one preferentially for the motif determined in vivo and presenting more similarity with other motifs of this TF





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