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  • UCSC Genome Browser Home
    Training - Visit our training page for videos, manuals, and tutorials on the Genome Browser; Education - We offer teaching modules using the Genome Browser aimed at the undergraduate classroom; Workshops - If you would like to request a virtual or in-person workshop, please contact us
  • UCSC Genome Browser Gateway - BLAT
    UCSC Genome Browser Genome Browser Gateway Home; Genomes Human GRCh38 hg38; Human GRCh37 hg19; Human T2T-CHM13 hs1; Mouse GRCm39 mm39; Mouse GRCm38 mm10; Genome Archive GenArk; Other; Genome Browser Back to Genome Browser; Configure; Track Search; Short Exact DNA Match; Reset All User Settings; Tools Blat; In-Silico PCR
  • Track Data Hubs - BLAT
    Track data hubs are collections of external tracks that can be added to the UCSC Genome Browser Click Connect to attach a hub and redirect to the assembly gateway page Hub tracks will then show up in the hub's own blue bar track group under the browser graphic
  • UCSC Genome Browser Home - BLAT
    Training - Visit our training page for videos, manuals, and tutorials on the Genome Browser; Education - We offer teaching modules using the Genome Browser aimed at the undergraduate classroom; Workshops - If you would like to request a virtual or in-person workshop, please contact us
  • Genome Browser BAM Track Format - BLAT
    On the following page, press the chr21 link in the custom track listing to view the BAM track in the Genome Browser Example #2 In this example, you will create indexed BAM from an existing SAM file
  • Genome Browser Users Guide - BLAT
    As an alternative, the UCSC Genome Browser provides a rapid and reliable display of any requested portion of genomes at any scale, together with dozens of aligned annotation tracks (known genes, predicted genes, ESTs, mRNAs, CpG islands, assembly gaps and coverage, chromosomal bands, mouse homologies, and more)
  • Genome Browser Training - BLAT
    Teaching bioinformatics and neuroinformatics by using free web-based tools - student-level tutorial that demonstrates the combined use of several major bioinformatic tools (including the UCSC Genome Browser) in answering a series of related research questions
  • Human BLAT Search
    To search for short sequences < 20bp only in the sequence shown on the Genome Browser, use our Short Sequence Match track, If you are using the command line and want to search the entire genome, our command line tool findMotifs, from the utilities download page
  • Human hg38 chr7:155,799,529-155,812,871 UCSC Genome Browser v482 - BLAT
    <div class='noscript'><div class='noscript-inner'><p><b>JavaScript is disabled in your web browser< b>< p><p>You must have JavaScript enabled in your web browser to
  • Add Custom Tracks - BLAT
    The Genome Browser supports both the HTTP and FTP (passive-only) protocols Click the "Browse" button directly above the URL data text box, then choose a custom track file from your local computer, or type the pathname of the file into the "upload" text box adjacent to the "Browse" button





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